IL_6PC8_004

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

6PC8|1|I|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_004 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.1841

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6PC8|1|I|G|81
6PC8|1|I|U|82
6PC8|1|I|A|83
6PC8|1|I|A|84
6PC8|1|I|G|85
*
6PC8|1|I|C|97
6PC8|1|I|G|98
6PC8|1|I|U|99
6PC8|1|I|U|100
6PC8|1|I|A|101
6PC8|1|I|U|102
6PC8|1|I|A|103
6PC8|1|I|A|104
6PC8|1|I|C|105

Current chains

Chain I

23S ribosomal RNA

Nearby chains