IL_6PC8_009

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3514

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6PC8|1|I|C|274
6PC8|1|I|C|275
6PC8|1|I|U|276
6PC8|1|I|G|277
6PC8|1|I|A|278
6PC8|1|I|A|279
6PC8|1|I|U|280
6PC8|1|I|C|281
*
6PC8|1|I|G|359
6PC8|1|I|U|360
6PC8|1|I|G|361
6PC8|1|I|A|362
6PC8|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains