IL_6PC8_011

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6PC8|1|I|A|504, 6PC8|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.087

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6PC8|1|I|G|481
6PC8|1|I|A|482
6PC8|1|I|A|483
6PC8|1|I|C|484
*
6PC8|1|I|G|496
6PC8|1|I|A|497
6PC8|1|I|G|498
6PC8|1|I|U|499
6PC8|1|I|G|500
6PC8|1|I|A|501
6PC8|1|I|A|502
6PC8|1|I|A|503
6PC8|1|I|A|504
6PC8|1|I|A|505
6PC8|1|I|G|506
6PC8|1|I|A|507
6PC8|1|I|A|508
6PC8|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains