IL_6PC8_030

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_030 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.3206

The information below is about IL_1U6B_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6PC8|1|I|G|875
6PC8|1|I|C|876
6PC8|1|I|A|877
6PC8|1|I|A|878
6PC8|1|I|G|879
*
6PC8|1|I|C|898
6PC8|1|I|A|899
6PC8|1|I|A|900
6PC8|1|I|C|901
6PC8|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains