IL_6PC8_041

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGUUGG*CCAUCAUUUAAAGAAAGCGUAAUAGCUCAC

Length

38 nucleotides

Bulged bases

6PC8|1|I|U|1061, 6PC8|1|I|U|1078, 6PC8|1|I|A|1084, 6PC8|1|I|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC8|1|I|G|1056
6PC8|1|I|A|1057
6PC8|1|I|U|1058
6PC8|1|I|G|1059
6PC8|1|I|U|1060
6PC8|1|I|U|1061
6PC8|1|I|G|1062
6PC8|1|I|G|1063
*
6PC8|1|I|C|1075
6PC8|1|I|C|1076
6PC8|1|I|A|1077
6PC8|1|I|U|1078
6PC8|1|I|C|1079
6PC8|1|I|A|1080
6PC8|1|I|U|1081
6PC8|1|I|U|1082
6PC8|1|I|U|1083
6PC8|1|I|A|1084
6PC8|1|I|A|1085
6PC8|1|I|A|1086
6PC8|1|I|G|1087
6PC8|1|I|A|1088
6PC8|1|I|A|1089
6PC8|1|I|A|1090
6PC8|1|I|G|1091
6PC8|1|I|C|1092
6PC8|1|I|G|1093
6PC8|1|I|U|1094
6PC8|1|I|A|1095
6PC8|1|I|A|1096
6PC8|1|I|U|1097
6PC8|1|I|A|1098
6PC8|1|I|G|1099
6PC8|1|I|C|1100
6PC8|1|I|U|1101
6PC8|1|I|C|1102
6PC8|1|I|A|1103
6PC8|1|I|C|1104

Current chains

Chain I

23S ribosomal RNA

Nearby chains