IL_6PC8_045

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_045 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0721

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6PC8|1|I|A|1262
6PC8|1|I|U|1263
6PC8|1|I|A|1264
6PC8|1|I|A|1265
6PC8|1|I|G|1266
6PC8|1|I|U|1267
6PC8|1|I|A|1268
6PC8|1|I|A|1269
*
6PC8|1|I|U|2011
6PC8|1|I|G|2012
6PC8|1|I|A|2013
6PC8|1|I|A|2014
6PC8|1|I|A|2015
6PC8|1|I|U|2016
6PC8|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4