IL_6PC8_064

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6PC8|1|I|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_064 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0838

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6PC8|1|I|C|1686
6PC8|1|I|G|1687
6PC8|1|I|U|1688
6PC8|1|I|A|1689
6PC8|1|I|A|1690
6PC8|1|I|C|1691
*
6PC8|1|I|G|1696
6PC8|1|I|G|1697
6PC8|1|I|A|1698
6PC8|1|I|G|1699
6PC8|1|I|A|1700
6PC8|1|I|A|1701
6PC8|1|I|G|1702

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2