3D structure

PDB id
6PC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 40q
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
6PC8|1|I|A|1938, 6PC8|1|I|U|1944, 6PC8|1|I|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PC8_074 not in the Motif Atlas
Homologous match to IL_7A0S_072
Geometric discrepancy: 0.1227
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

6PC8|1|I|C|1934
6PC8|1|I|G|1935
6PC8|1|I|A|1936
6PC8|1|I|A|1937
6PC8|1|I|A|1938
6PC8|1|I|5MU|1939
6PC8|1|I|U|1940
6PC8|1|I|C|1941
6PC8|1|I|C|1942
6PC8|1|I|U|1943
6PC8|1|I|U|1944
6PC8|1|I|G|1945
*
6PC8|1|I|C|1961
6PC8|1|I|5MC|1962
6PC8|1|I|U|1963
6PC8|1|I|G|1964

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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