IL_6PC8_076

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6PC8|1|I|C|2055, 6PC8|1|I|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_076 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0689

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6PC8|1|I|A|2054
6PC8|1|I|C|2055
6PC8|1|I|G|2056
*
6PC8|1|I|C|2612
6PC8|1|I|U|2613
6PC8|1|I|A|2614
6PC8|1|I|U|2615

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3