IL_6PC8_082

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGUGUAGGAUAGG*CCCUUU

Length

21 nucleotides

Bulged bases

6PC8|1|I|G|2116, 6PC8|1|I|U|2118, 6PC8|1|I|U|2180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC8|1|I|G|2107
6PC8|1|I|A|2108
6PC8|1|I|U|2109
6PC8|1|I|G|2110
6PC8|1|I|U|2111
6PC8|1|I|G|2112
6PC8|1|I|U|2113
6PC8|1|I|A|2114
6PC8|1|I|G|2115
6PC8|1|I|G|2116
6PC8|1|I|A|2117
6PC8|1|I|U|2118
6PC8|1|I|A|2119
6PC8|1|I|G|2120
6PC8|1|I|G|2121
*
6PC8|1|I|C|2177
6PC8|1|I|C|2178
6PC8|1|I|C|2179
6PC8|1|I|U|2180
6PC8|1|I|U|2181
6PC8|1|I|U|2182

Current chains

Chain I

23S ribosomal RNA

Nearby chains