IL_6PC8_088

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAC*GUGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_088 not in the Motif Atlas

Geometric match to IL_8P9A_467

Geometric discrepancy: 0.3936

The information below is about IL_8P9A_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07469.2

Basepair signature

cWW-tSH-cWW-cSH-R-cWW

Number of instances in this motif group

3

Unit IDs

6PC8|1|I|A|2459
6PC8|1|I|U|2460
6PC8|1|I|A|2461
6PC8|1|I|C|2462
*
6PC8|1|I|G|2488
6PC8|1|I|U|2489
6PC8|1|I|G|2490
6PC8|1|I|U|2491
6PC8|1|I|U|2492
6PC8|1|I|U|2493

Current chains

Chain I

23S ribosomal RNA

Nearby chains