IL_6PC8_113

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6PC8|1|I|U|846, 6PC8|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_113 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3977

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6PC8|1|I|A|844
6PC8|1|I|A|845
6PC8|1|I|U|846
6PC8|1|I|U|847
6PC8|1|I|C|848
*
6PC8|1|I|G|930
6PC8|1|I|U|931
6PC8|1|I|U|932
6PC8|1|I|A|933
6PC8|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains