IL_6PCH_001

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_001 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.1243

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|G|24
6PCH|1|I|U|25
6PCH|1|I|G|26
6PCH|1|I|G|27
6PCH|1|I|A|28
6PCH|1|I|U|29
6PCH|1|I|G|30
*
6PCH|1|I|C|510
6PCH|1|I|U|511
6PCH|1|I|G|512
6PCH|1|I|A|513
6PCH|1|I|A|514
6PCH|1|I|A|515
6PCH|1|I|C|516

Current chains

Chain I

23S ribosomal RNA

Nearby chains