IL_6PCH_011

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6PCH|1|I|A|504, 6PCH|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_011 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.1119

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6PCH|1|I|G|481
6PCH|1|I|A|482
6PCH|1|I|A|483
6PCH|1|I|C|484
*
6PCH|1|I|G|496
6PCH|1|I|A|497
6PCH|1|I|G|498
6PCH|1|I|U|499
6PCH|1|I|G|500
6PCH|1|I|A|501
6PCH|1|I|A|502
6PCH|1|I|A|503
6PCH|1|I|A|504
6PCH|1|I|A|505
6PCH|1|I|G|506
6PCH|1|I|A|507
6PCH|1|I|A|508
6PCH|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains