IL_6PCH_030

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_030 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2898

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6PCH|1|I|G|875
6PCH|1|I|C|876
6PCH|1|I|A|877
6PCH|1|I|A|878
6PCH|1|I|G|879
*
6PCH|1|I|C|898
6PCH|1|I|A|899
6PCH|1|I|A|900
6PCH|1|I|C|901
6PCH|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains