IL_6PCH_044

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_044 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1328

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6PCH|1|I|A|1262
6PCH|1|I|U|1263
6PCH|1|I|A|1264
6PCH|1|I|A|1265
6PCH|1|I|G|1266
6PCH|1|I|U|1267
6PCH|1|I|A|1268
6PCH|1|I|A|1269
*
6PCH|1|I|U|2011
6PCH|1|I|G|2012
6PCH|1|I|A|2013
6PCH|1|I|A|2014
6PCH|1|I|A|2015
6PCH|1|I|U|2016
6PCH|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4