IL_6PCH_050

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6PCH|1|I|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_050 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1273

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6PCH|1|I|C|1417
6PCH|1|I|G|1418
6PCH|1|I|A|1419
6PCH|1|I|A|1420
6PCH|1|I|G|1421
*
6PCH|1|I|C|1577
6PCH|1|I|U|1578
6PCH|1|I|A|1579
6PCH|1|I|A|1580
6PCH|1|I|G|1581

Current chains

Chain I

23S ribosomal RNA

Nearby chains