IL_6PCH_072

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAA(5MU)UCCUUG*C(5MC)UGCAC

Length

20 nucleotides

Bulged bases

6PCH|1|I|A|1938, 6PCH|1|I|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCH|1|I|G|1933
6PCH|1|I|C|1934
6PCH|1|I|G|1935
6PCH|1|I|A|1936
6PCH|1|I|A|1937
6PCH|1|I|A|1938
6PCH|1|I|5MU|1939
6PCH|1|I|U|1940
6PCH|1|I|C|1941
6PCH|1|I|C|1942
6PCH|1|I|U|1943
6PCH|1|I|U|1944
6PCH|1|I|G|1945
*
6PCH|1|I|C|1961
6PCH|1|I|5MC|1962
6PCH|1|I|U|1963
6PCH|1|I|G|1964
6PCH|1|I|C|1965
6PCH|1|I|A|1966
6PCH|1|I|C|1967

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2