IL_6PCH_108

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6PCH|1|I|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_108 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3319

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6PCH|1|I|C|274
6PCH|1|I|C|275
6PCH|1|I|U|276
6PCH|1|I|G|277
6PCH|1|I|A|278
6PCH|1|I|A|279
6PCH|1|I|U|280
6PCH|1|I|C|281
*
6PCH|1|I|G|359
6PCH|1|I|U|360
6PCH|1|I|G|361
6PCH|1|I|A|362
6PCH|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains