3D structure

PDB id
6PCH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GG*CA(OMC)
Length
5 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PCH_120 not in the Motif Atlas
Homologous match to IL_9DFE_092
Geometric discrepancy: 0.1461
The information below is about IL_9DFE_092
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.7
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
40

Unit IDs

6PCH|1|I|G|2454
6PCH|1|I|G|2455
*
6PCH|1|I|C|2496
6PCH|1|I|A|2497
6PCH|1|I|OMC|2498

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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