IL_6PCH_128

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

86 nucleotides

Bulged bases

6PCH|1|I|C|2104, 6PCH|1|I|U|2118, 6PCH|1|I|U|2122, 6PCH|1|I|G|2125, 6PCH|1|I|A|2126, 6PCH|1|I|G|2128, 6PCH|1|I|U|2131, 6PCH|1|I|U|2132, 6PCH|1|I|A|2135, 6PCH|1|I|G|2136, 6PCH|1|I|U|2139, 6PCH|1|I|G|2140, 6PCH|1|I|C|2160, 6PCH|1|I|A|2163, 6PCH|1|I|U|2167, 6PCH|1|I|A|2171, 6PCH|1|I|U|2172, 6PCH|1|I|A|2173, 6PCH|1|I|C|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCH|1|I|A|2101
6PCH|1|I|G|2102
6PCH|1|I|C|2103
6PCH|1|I|C|2104
6PCH|1|I|U|2105
6PCH|1|I|U|2106
6PCH|1|I|G|2107
6PCH|1|I|A|2108
6PCH|1|I|U|2109
6PCH|1|I|G|2110
6PCH|1|I|U|2111
6PCH|1|I|G|2112
6PCH|1|I|U|2113
6PCH|1|I|A|2114
6PCH|1|I|G|2115
6PCH|1|I|G|2116
6PCH|1|I|A|2117
6PCH|1|I|U|2118
6PCH|1|I|A|2119
6PCH|1|I|G|2120
6PCH|1|I|G|2121
6PCH|1|I|U|2122
6PCH|1|I|G|2123
6PCH|1|I|G|2124
6PCH|1|I|G|2125
6PCH|1|I|A|2126
6PCH|1|I|G|2127
6PCH|1|I|G|2128
6PCH|1|I|C|2129
6PCH|1|I|U|2130
6PCH|1|I|U|2131
6PCH|1|I|U|2132
6PCH|1|I|G|2133
6PCH|1|I|A|2134
6PCH|1|I|A|2135
6PCH|1|I|G|2136
6PCH|1|I|U|2137
6PCH|1|I|G|2138
6PCH|1|I|U|2139
6PCH|1|I|G|2140
6PCH|1|I|G|2141
6PCH|1|I|A|2142
6PCH|1|I|C|2143
6PCH|1|I|G|2144
6PCH|1|I|C|2145
6PCH|1|I|C|2146
6PCH|1|I|A|2147
6PCH|1|I|G|2148
6PCH|1|I|U|2149
6PCH|1|I|C|2150
6PCH|1|I|U|2151
6PCH|1|I|G|2152
6PCH|1|I|C|2153
*
6PCH|1|I|G|2156
6PCH|1|I|G|2157
6PCH|1|I|A|2158
6PCH|1|I|G|2159
6PCH|1|I|C|2160
6PCH|1|I|C|2161
6PCH|1|I|G|2162
6PCH|1|I|A|2163
6PCH|1|I|C|2164
6PCH|1|I|C|2165
6PCH|1|I|U|2166
6PCH|1|I|U|2167
6PCH|1|I|G|2168
6PCH|1|I|A|2169
6PCH|1|I|A|2170
6PCH|1|I|A|2171
6PCH|1|I|U|2172
6PCH|1|I|A|2173
6PCH|1|I|C|2174
6PCH|1|I|C|2175
6PCH|1|I|A|2176
6PCH|1|I|C|2177
6PCH|1|I|C|2178
6PCH|1|I|C|2179
6PCH|1|I|U|2180
6PCH|1|I|U|2181
6PCH|1|I|U|2182
6PCH|1|I|A|2183
6PCH|1|I|A|2184
6PCH|1|I|U|2185
6PCH|1|I|G|2186
6PCH|1|I|U|2187
6PCH|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains