IL_6PCQ_004

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

6PCQ|1|I|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_004 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.1971

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6PCQ|1|I|G|81
6PCQ|1|I|U|82
6PCQ|1|I|A|83
6PCQ|1|I|A|84
6PCQ|1|I|G|85
*
6PCQ|1|I|C|97
6PCQ|1|I|G|98
6PCQ|1|I|U|99
6PCQ|1|I|U|100
6PCQ|1|I|A|101
6PCQ|1|I|U|102
6PCQ|1|I|A|103
6PCQ|1|I|A|104
6PCQ|1|I|C|105

Current chains

Chain I

23S ribosomal RNA

Nearby chains