IL_6PCQ_021

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6PCQ|1|I|G|776, 6PCQ|1|I|A|788, 6PCQ|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_021 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.1335

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6PCQ|1|I|G|775
6PCQ|1|I|G|776
6PCQ|1|I|G|777
*
6PCQ|1|I|C|787
6PCQ|1|I|A|788
6PCQ|1|I|A|789
6PCQ|1|I|U|790
6PCQ|1|I|C|791

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2