IL_6PCQ_034

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6PCQ|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_034 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0801

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|U|1018
6PCQ|1|I|U|1019
6PCQ|1|I|A|1020
6PCQ|1|I|A|1021
6PCQ|1|I|G|1022
6PCQ|1|I|U|1023
6PCQ|1|I|G|1024
*
6PCQ|1|I|C|1140
6PCQ|1|I|U|1141
6PCQ|1|I|A|1142
6PCQ|1|I|A|1143
6PCQ|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13