IL_6PCQ_035

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

6PCQ|1|I|A|1127, 6PCQ|1|I|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_035 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.0933

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

6PCQ|1|I|G|1024
6PCQ|1|I|G|1025
6PCQ|1|I|G|1026
6PCQ|1|I|A|1027
6PCQ|1|I|A|1028
6PCQ|1|I|A|1029
6PCQ|1|I|C|1030
*
6PCQ|1|I|G|1124
6PCQ|1|I|G|1125
6PCQ|1|I|A|1126
6PCQ|1|I|A|1127
6PCQ|1|I|G|1128
6PCQ|1|I|A|1129
6PCQ|1|I|U|1130
6PCQ|1|I|G|1131
6PCQ|1|I|U|1132
6PCQ|1|I|A|1133
6PCQ|1|I|A|1134
6PCQ|1|I|C|1135
6PCQ|1|I|G|1136
6PCQ|1|I|G|1137
6PCQ|1|I|G|1138
6PCQ|1|I|G|1139
6PCQ|1|I|C|1140

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13