IL_6PCQ_063

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6PCQ|1|I|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_063 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0783

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6PCQ|1|I|C|1686
6PCQ|1|I|G|1687
6PCQ|1|I|U|1688
6PCQ|1|I|A|1689
6PCQ|1|I|A|1690
6PCQ|1|I|C|1691
*
6PCQ|1|I|G|1696
6PCQ|1|I|G|1697
6PCQ|1|I|A|1698
6PCQ|1|I|G|1699
6PCQ|1|I|A|1700
6PCQ|1|I|A|1701
6PCQ|1|I|G|1702

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2