IL_6PCQ_074

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6PCQ|1|I|A|1938, 6PCQ|1|I|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_074 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1503

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|C|1934
6PCQ|1|I|G|1935
6PCQ|1|I|A|1936
6PCQ|1|I|A|1937
6PCQ|1|I|A|1938
6PCQ|1|I|5MU|1939
6PCQ|1|I|U|1940
6PCQ|1|I|C|1941
6PCQ|1|I|C|1942
6PCQ|1|I|U|1943
6PCQ|1|I|U|1944
6PCQ|1|I|G|1945
*
6PCQ|1|I|C|1961
6PCQ|1|I|5MC|1962
6PCQ|1|I|U|1963
6PCQ|1|I|G|1964

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2