IL_6PCQ_078

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GU(G7M)A*UCC

Length

7 nucleotides

Bulged bases

6PCQ|1|I|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_078 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.1635

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|G|2067
6PCQ|1|I|U|2068
6PCQ|1|I|G7M|2069
6PCQ|1|I|A|2070
*
6PCQ|1|I|U|2441
6PCQ|1|I|C|2442
6PCQ|1|I|C|2443

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4