IL_6PCQ_085

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_085 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.1269

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6PCQ|1|I|C|2350
6PCQ|1|I|G|2351
6PCQ|1|I|A|2352
6PCQ|1|I|G|2353
*
6PCQ|1|I|C|2364
6PCQ|1|I|G|2365
6PCQ|1|I|A|2366
6PCQ|1|I|G|2367

Current chains

Chain I

23S ribosomal RNA

Nearby chains