IL_6PCQ_103

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_103 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.1172

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

6PCQ|1|I|C|2806
6PCQ|1|I|U|2807
6PCQ|1|I|G|2808
6PCQ|1|I|A|2809
6PCQ|1|I|A|2810
6PCQ|1|I|G|2811
*
6PCQ|1|I|C|2889
6PCQ|1|I|G|2890
6PCQ|1|I|U|2891
6PCQ|1|I|G|2892

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3