IL_6PCQ_115

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_115 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2502

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6PCQ|1|I|G|869
6PCQ|1|I|U|870
6PCQ|1|I|U|871
6PCQ|1|I|U|872
*
6PCQ|1|I|A|905
6PCQ|1|I|U|906
6PCQ|1|I|G|907
6PCQ|1|I|C|908

Current chains

Chain I

23S ribosomal RNA

Nearby chains