IL_6PCR_006

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_006 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.0734

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6PCR|1|I|G|188
6PCR|1|I|G|189
6PCR|1|I|A|190
6PCR|1|I|A|191
6PCR|1|I|C|192
6PCR|1|I|U|193
6PCR|1|I|G|194
*
6PCR|1|I|C|201
6PCR|1|I|U|202
6PCR|1|I|A|203
6PCR|1|I|A|204
6PCR|1|I|G|205
6PCR|1|I|U|206
6PCR|1|I|A|207
6PCR|1|I|C|208

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15