IL_6PCR_011

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6PCR|1|I|A|504, 6PCR|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_011 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6PCR|1|I|G|481
6PCR|1|I|A|482
6PCR|1|I|A|483
6PCR|1|I|C|484
*
6PCR|1|I|G|496
6PCR|1|I|A|497
6PCR|1|I|G|498
6PCR|1|I|U|499
6PCR|1|I|G|500
6PCR|1|I|A|501
6PCR|1|I|A|502
6PCR|1|I|A|503
6PCR|1|I|A|504
6PCR|1|I|A|505
6PCR|1|I|G|506
6PCR|1|I|A|507
6PCR|1|I|A|508
6PCR|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains