IL_6PCR_021

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6PCR|1|I|G|776, 6PCR|1|I|A|788, 6PCR|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_021 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.1196

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6PCR|1|I|G|775
6PCR|1|I|G|776
6PCR|1|I|G|777
*
6PCR|1|I|C|787
6PCR|1|I|A|788
6PCR|1|I|A|789
6PCR|1|I|U|790
6PCR|1|I|C|791

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2