3D structure

PDB id
6PCR (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 40o
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
6PCR|1|I|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PCR_062 not in the Motif Atlas
Geometric match to IL_5J7L_307
Geometric discrepancy: 0.0916
The information below is about IL_5J7L_307
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6PCR|1|I|A|1669
6PCR|1|I|C|1670
6PCR|1|I|U|1671
6PCR|1|I|A|1672
6PCR|1|I|G|1673
6PCR|1|I|G|1674
*
6PCR|1|I|C|1990
6PCR|1|I|U|1991
6PCR|1|I|G|1992
6PCR|1|I|U|1993

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L3

Coloring options:


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