IL_6PCR_109

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6PCR|1|I|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_109 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3032

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6PCR|1|I|C|274
6PCR|1|I|C|275
6PCR|1|I|U|276
6PCR|1|I|G|277
6PCR|1|I|A|278
6PCR|1|I|A|279
6PCR|1|I|U|280
6PCR|1|I|C|281
*
6PCR|1|I|G|359
6PCR|1|I|U|360
6PCR|1|I|G|361
6PCR|1|I|A|362
6PCR|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains