IL_6PCR_112

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_112 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0732

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6PCR|1|I|G|1666
6PCR|1|I|G|1667
6PCR|1|I|A|1668
6PCR|1|I|A|1669
6PCR|1|I|C|1670
6PCR|1|I|U|1671
6PCR|1|I|A|1672
6PCR|1|I|G|1673
6PCR|1|I|G|1674
*
6PCR|1|I|C|1990
6PCR|1|I|U|1991
6PCR|1|I|G|1992
6PCR|1|I|U|1993
6PCR|1|I|C|1994

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3