IL_6PCR_115

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGG*CCCUUUAAUGUU

Length

33 nucleotides

Bulged bases

6PCR|1|I|C|2104, 6PCR|1|I|U|2111, 6PCR|1|I|G|2115, 6PCR|1|I|G|2116, 6PCR|1|I|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCR|1|I|A|2101
6PCR|1|I|G|2102
6PCR|1|I|C|2103
6PCR|1|I|C|2104
6PCR|1|I|U|2105
6PCR|1|I|U|2106
6PCR|1|I|G|2107
6PCR|1|I|A|2108
6PCR|1|I|U|2109
6PCR|1|I|G|2110
6PCR|1|I|U|2111
6PCR|1|I|G|2112
6PCR|1|I|U|2113
6PCR|1|I|A|2114
6PCR|1|I|G|2115
6PCR|1|I|G|2116
6PCR|1|I|A|2117
6PCR|1|I|U|2118
6PCR|1|I|A|2119
6PCR|1|I|G|2120
6PCR|1|I|G|2121
*
6PCR|1|I|C|2177
6PCR|1|I|C|2178
6PCR|1|I|C|2179
6PCR|1|I|U|2180
6PCR|1|I|U|2181
6PCR|1|I|U|2182
6PCR|1|I|A|2183
6PCR|1|I|A|2184
6PCR|1|I|U|2185
6PCR|1|I|G|2186
6PCR|1|I|U|2187
6PCR|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains