IL_6PCS_034

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6PCS|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_034 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0746

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6PCS|1|I|U|1018
6PCS|1|I|U|1019
6PCS|1|I|A|1020
6PCS|1|I|A|1021
6PCS|1|I|G|1022
6PCS|1|I|U|1023
6PCS|1|I|G|1024
*
6PCS|1|I|C|1140
6PCS|1|I|U|1141
6PCS|1|I|A|1142
6PCS|1|I|A|1143
6PCS|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13