IL_6PCS_107

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6PCS|1|I|U|846, 6PCS|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_107 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3868

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6PCS|1|I|A|844
6PCS|1|I|A|845
6PCS|1|I|U|846
6PCS|1|I|U|847
6PCS|1|I|C|848
*
6PCS|1|I|G|930
6PCS|1|I|U|931
6PCS|1|I|U|932
6PCS|1|I|A|933
6PCS|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains