IL_6PCS_114

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGG*CCCUUUAAUGUU

Length

33 nucleotides

Bulged bases

6PCS|1|I|C|2104, 6PCS|1|I|G|2116, 6PCS|1|I|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCS|1|I|A|2101
6PCS|1|I|G|2102
6PCS|1|I|C|2103
6PCS|1|I|C|2104
6PCS|1|I|U|2105
6PCS|1|I|U|2106
6PCS|1|I|G|2107
6PCS|1|I|A|2108
6PCS|1|I|U|2109
6PCS|1|I|G|2110
6PCS|1|I|U|2111
6PCS|1|I|G|2112
6PCS|1|I|U|2113
6PCS|1|I|A|2114
6PCS|1|I|G|2115
6PCS|1|I|G|2116
6PCS|1|I|A|2117
6PCS|1|I|U|2118
6PCS|1|I|A|2119
6PCS|1|I|G|2120
6PCS|1|I|G|2121
*
6PCS|1|I|C|2177
6PCS|1|I|C|2178
6PCS|1|I|C|2179
6PCS|1|I|U|2180
6PCS|1|I|U|2181
6PCS|1|I|U|2182
6PCS|1|I|A|2183
6PCS|1|I|A|2184
6PCS|1|I|U|2185
6PCS|1|I|G|2186
6PCS|1|I|U|2187
6PCS|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains