IL_6PCS_121
3D structure
- PDB id
- 6PCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound 40e
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACCCC*GAACUC
- Length
- 12 nucleotides
- Bulged bases
- 6PCS|1|J|C|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PCS_121 not in the Motif Atlas
- Homologous match to IL_7A0S_105
- Geometric discrepancy: 0.2915
- The information below is about IL_7A0S_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6PCS|1|J|G|33
6PCS|1|J|A|34
6PCS|1|J|C|35
6PCS|1|J|C|36
6PCS|1|J|C|37
6PCS|1|J|C|38
*
6PCS|1|J|G|44
6PCS|1|J|A|45
6PCS|1|J|A|46
6PCS|1|J|C|47
6PCS|1|J|U|48
6PCS|1|J|C|49
Current chains
- Chain J
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: