IL_6PCT_039

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGG*CUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCT_039 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3243

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6PCT|1|I|C|1053
6PCT|1|I|A|1054
6PCT|1|I|G|1055
6PCT|1|I|G|1056
*
6PCT|1|I|C|1104
6PCT|1|I|U|1105
6PCT|1|I|G|1106

Current chains

Chain I

23S ribosomal RNA

Nearby chains