IL_6PCT_110

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6PCT|1|I|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCT_110 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3474

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6PCT|1|I|C|274
6PCT|1|I|C|275
6PCT|1|I|U|276
6PCT|1|I|G|277
6PCT|1|I|A|278
6PCT|1|I|A|279
6PCT|1|I|U|280
6PCT|1|I|C|281
*
6PCT|1|I|G|359
6PCT|1|I|U|360
6PCT|1|I|G|361
6PCT|1|I|A|362
6PCT|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains