IL_6PCT_118

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUG

Length

90 nucleotides

Bulged bases

6PCT|1|I|C|2104, 6PCT|1|I|G|2116, 6PCT|1|I|U|2122, 6PCT|1|I|G|2125, 6PCT|1|I|A|2126, 6PCT|1|I|G|2128, 6PCT|1|I|U|2132, 6PCT|1|I|A|2134, 6PCT|1|I|A|2135, 6PCT|1|I|G|2140, 6PCT|1|I|U|2151, 6PCT|1|I|G|2152, 6PCT|1|I|G|2157, 6PCT|1|I|A|2158, 6PCT|1|I|C|2160, 6PCT|1|I|A|2171

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCT|1|I|U|2099
6PCT|1|I|G|2100
6PCT|1|I|A|2101
6PCT|1|I|G|2102
6PCT|1|I|C|2103
6PCT|1|I|C|2104
6PCT|1|I|U|2105
6PCT|1|I|U|2106
6PCT|1|I|G|2107
6PCT|1|I|A|2108
6PCT|1|I|U|2109
6PCT|1|I|G|2110
6PCT|1|I|U|2111
6PCT|1|I|G|2112
6PCT|1|I|U|2113
6PCT|1|I|A|2114
6PCT|1|I|G|2115
6PCT|1|I|G|2116
6PCT|1|I|A|2117
6PCT|1|I|U|2118
6PCT|1|I|A|2119
6PCT|1|I|G|2120
6PCT|1|I|G|2121
6PCT|1|I|U|2122
6PCT|1|I|G|2123
6PCT|1|I|G|2124
6PCT|1|I|G|2125
6PCT|1|I|A|2126
6PCT|1|I|G|2127
6PCT|1|I|G|2128
6PCT|1|I|C|2129
6PCT|1|I|U|2130
6PCT|1|I|U|2131
6PCT|1|I|U|2132
6PCT|1|I|G|2133
6PCT|1|I|A|2134
6PCT|1|I|A|2135
6PCT|1|I|G|2136
6PCT|1|I|U|2137
6PCT|1|I|G|2138
6PCT|1|I|U|2139
6PCT|1|I|G|2140
6PCT|1|I|G|2141
6PCT|1|I|A|2142
6PCT|1|I|C|2143
6PCT|1|I|G|2144
6PCT|1|I|C|2145
6PCT|1|I|C|2146
6PCT|1|I|A|2147
6PCT|1|I|G|2148
6PCT|1|I|U|2149
6PCT|1|I|C|2150
6PCT|1|I|U|2151
6PCT|1|I|G|2152
6PCT|1|I|C|2153
*
6PCT|1|I|G|2156
6PCT|1|I|G|2157
6PCT|1|I|A|2158
6PCT|1|I|G|2159
6PCT|1|I|C|2160
6PCT|1|I|C|2161
6PCT|1|I|G|2162
6PCT|1|I|A|2163
6PCT|1|I|C|2164
6PCT|1|I|C|2165
6PCT|1|I|U|2166
6PCT|1|I|U|2167
6PCT|1|I|G|2168
6PCT|1|I|A|2169
6PCT|1|I|A|2170
6PCT|1|I|A|2171
6PCT|1|I|U|2172
6PCT|1|I|A|2173
6PCT|1|I|C|2174
6PCT|1|I|C|2175
6PCT|1|I|A|2176
6PCT|1|I|C|2177
6PCT|1|I|C|2178
6PCT|1|I|C|2179
6PCT|1|I|U|2180
6PCT|1|I|U|2181
6PCT|1|I|U|2182
6PCT|1|I|A|2183
6PCT|1|I|A|2184
6PCT|1|I|U|2185
6PCT|1|I|G|2186
6PCT|1|I|U|2187
6PCT|1|I|U|2188
6PCT|1|I|U|2189
6PCT|1|I|G|2190

Current chains

Chain I

23S ribosomal RNA

Nearby chains