IL_6PIJ_002

3D structure

PDB id

6PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Target DNA-bound V. cholerae TniQ-Cascade complex, closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGG*CCTG

Length

8 nucleotides

Bulged bases

6PIJ|1|1|G|14, 6PIJ|1|2|DC|47

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PIJ|1|1|C|12
6PIJ|1|1|A|13
6PIJ|1|1|G|14
6PIJ|1|1|G|15
*
6PIJ|1|2|DC|46
6PIJ|1|2|DC|47
6PIJ|1|2|DT|48
6PIJ|1|2|DG|49

Current chains

Chain 1

guide RNA

Chain 2

Targeting strand ssDNA

Nearby chains

Chain A

cas7 type I-F CRISPR-associated protein Csy3

Chain B

cas7 type I-F CRISPR-associated protein Csy3

Chain C

cas7 type I-F CRISPR-associated protein Csy3