IL_6PJ6_001
3D structure
- PDB id
- 6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cryo-EM structure of E.coli 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PJ6_001 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0703
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6PJ6|1|I|G|24
6PJ6|1|I|U|25
6PJ6|1|I|G|26
6PJ6|1|I|G|27
6PJ6|1|I|A|28
6PJ6|1|I|U|29
6PJ6|1|I|G|30
*
6PJ6|1|I|C|510
6PJ6|1|I|U|511
6PJ6|1|I|G|512
6PJ6|1|I|A|513
6PJ6|1|I|A|514
6PJ6|1|I|A|515
6PJ6|1|I|C|516
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L20
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
Coloring options: