IL_6PJ6_035

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6PJ6|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_035 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0625

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6PJ6|1|I|U|1018
6PJ6|1|I|U|1019
6PJ6|1|I|A|1020
6PJ6|1|I|A|1021
6PJ6|1|I|G|1022
6PJ6|1|I|U|1023
6PJ6|1|I|G|1024
*
6PJ6|1|I|C|1140
6PJ6|1|I|U|1141
6PJ6|1|I|A|1142
6PJ6|1|I|A|1143
6PJ6|1|I|A|1144

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36