IL_6PJ6_040

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUUG*CAUCA

Length

10 nucleotides

Bulged bases

6PJ6|1|I|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_040 not in the Motif Atlas

Geometric match to IL_5J7L_384

Geometric discrepancy: 0.3486

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6PJ6|1|I|U|1058
6PJ6|1|I|G|1059
6PJ6|1|I|U|1060
6PJ6|1|I|U|1061
6PJ6|1|I|G|1062
*
6PJ6|1|I|C|1076
6PJ6|1|I|A|1077
6PJ6|1|I|U|1078
6PJ6|1|I|C|1079
6PJ6|1|I|A|1080

Current chains

Chain I

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L11