IL_6PJ6_076

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6PJ6|1|I|A|1938, 6PJ6|1|I|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_076 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1481

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

6PJ6|1|I|C|1934
6PJ6|1|I|G|1935
6PJ6|1|I|A|1936
6PJ6|1|I|A|1937
6PJ6|1|I|A|1938
6PJ6|1|I|5MU|1939
6PJ6|1|I|U|1940
6PJ6|1|I|C|1941
6PJ6|1|I|C|1942
6PJ6|1|I|U|1943
6PJ6|1|I|U|1944
6PJ6|1|I|G|1945
*
6PJ6|1|I|C|1961
6PJ6|1|I|5MC|1962
6PJ6|1|I|U|1963
6PJ6|1|I|G|1964

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2